2Y8O	Transferase	date	Feb 08, 2011
title	Crystal Structure Of Human P38alpha Complexed With A Mapk Do Peptide
authors	T.Barkai, A.Garai, I.Toeroe, A.Remenyi
compound		source
Molecule: Mitogen-Activated Protein Kinase 14 Chain: A Synonym: Cytokine Suppressive Anti-Inflammatory Drug-Bindin Map Kinase Mxi2, Max-Interacting Protein 2, Mitogen-Activat Kinase P38 Alpha; Ec: 2.7.11.24 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Rosetta Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet Derivative
Molecule: Dual Specificity Mitogen-Activated Protein Kinase Chain: B Fragment: N-Terminal Docking Peptide Of Mkk6, Residues 4-17 Synonym: Mapkerk Kinase 6, Sapkk3 Ec: 2.7.12.2 Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 31 2 1	R_factor 0.176 R_Free 0.209
crystal cell	length a length b length c angle alpha angle beta angle gamma 81.920 81.920 122.590 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.95 Å
ligand		enzyme	Transferase E.C.2.7.11.24 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Specificity of linear motifs that bind to a common mitogen-activated protein kinase docking groove., Garai A, Zeke A, Gogl G, Toro I, Fordos F, Blankenburg H, Barkai T, Varga J, Alexa A, Emig D, Albrecht M, Remenyi A, Sci Signal. 2012 Oct 9;5(245):ra74. doi: 10.1126/scisignal.2003004. PMID:23047924

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk] Biological Unit Coordinates (2y8o.pdb1.gz) 115 Kb CSU: Contacts of Structural Units for 2Y8O Structure Factors (594 Kb) Retrieve 2Y8O in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2Y8O from S2C, [Save to disk] Re-refined 2y8o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2Y8O in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2Y8O

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2Y8O, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2y8o_A] [2y8o] [2y8o_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 2Y8O: [S_TKc ] by SMART

Other resources with information on 2Y8O

Community annotation for 2Y8O at PDBWiki (http://pdbwiki.org)

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