2Y8P Lyase date Feb 08, 2011
title Crystal Structure Of An Outer Membrane-Anchored Endolytic Peptidoglycan Lytic Transglycosylase (Mlte) From Escherichia Coli
authors C.Artola-Recolons, C.Carrasco-Lopez, L.I.Llarrull, M.Kumarasiri E.Lastochkin, I.Martinez-Ilarduya, K.Meindl, I.Uson, S.Mobasher J.A.Hermoso
compound source
Molecule: Endo-Type Membrane-Bound Lytic Murein Transglycos
Chain: A, B
Fragment: Residues 19-203
Synonym: Peptidoglycan Lytic Endotransglycosylase
Ec: 4.2.2.-
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12
Expression_system: Escherichia Coli
Expression_system_taxid: 83333
Expression_system_strain: K-12
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet-24a
symmetry Space Group: C 2 2 21
R_factor 0.2030 R_Free 0.2518
crystal
cell
length a length b length c angle alpha angle beta angle gamma
123.324 183.932 35.292 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand
enzyme Lyase E.C.4.2.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceHigh-Resolution Crystal Structure of MltE, an Outer Membrane-Anchored Endolytic Peptidoglycan Lytic Transglycosylase from Escherichia coli., Artola-Recolons C, Carrasco-Lopez C, Llarrull LI, Kumarasiri M, Lastochkin E, Martinez de Ilarduya I, Meindl K, Uson I, Mobashery S, Hermoso JA, Biochemistry. 2011 Apr 5;50(13):2384-2386. Epub 2011 Mar 8. PMID:21341761
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (2y8p.pdb1.gz) 33 Kb
  • Biological Unit Coordinates (2y8p.pdb2.gz) 32 Kb
  • CSU: Contacts of Structural Units for 2Y8P
  • Structure Factors (444 Kb)
  • Retrieve 2Y8P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Y8P from S2C, [Save to disk]
  • Re-refined 2y8p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Y8P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Y8P
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Y8P, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2y8p_B] [2y8p] [2y8p_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2Y8P
  • Community annotation for 2Y8P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science