2YAT Transcription date Feb 24, 2011
title Crystal Structure Of Estradiol Derived Metal Chelate And Est Receptor-Ligand Binding Domain Complex
authors M.J.Li, H.M.Greenblatt, O.Dym, S.Albeck, H.Degani, J.L.Sussman
compound source
Molecule: Estrogen Receptor
Chain: A
Fragment: Ligand-Binding Domain, Residues 301-551
Synonym: Estrogen Receptor Alpha, Er, Er-Alpha, Estradiol R Nuclear Receptor Subfamily 3 Group A Member 1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet21b
symmetry Space Group: P 32 1 2
R_factor 0.182 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.693 64.693 133.345 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand EEU, EU, FMT enzyme
Primary referenceStructure of estradiol metal chelate and estrogen receptor complex: The basis for designing a new class of selective estrogen receptor modulators., Li MJ, Greenblatt HM, Dym O, Albeck S, Pais A, Gunanathan C, Milstein D, Degani H, Sussman JL, J Med Chem. 2011 Apr 7. PMID:21473635
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (2yat.pdb1.gz) 152 Kb
  • LPC: Ligand-Protein Contacts for 2YAT
  • CSU: Contacts of Structural Units for 2YAT
  • Structure Factors (383 Kb)
  • Retrieve 2YAT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YAT from S2C, [Save to disk]
  • Re-refined 2yat structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2YAT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YAT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YAT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yat] [2yat_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2YAT: [HOLI ] by SMART
  • Other resources with information on 2YAT
  • Community annotation for 2YAT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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