4BI5 Isomerase date Apr 09, 2013
title Crystal Structure Of A Double Mutant (C202a And C222d) Of Triosephosphate Isomerase From Giardia Lamblia.
authors A.Torres-Larios, S.Enriquez-Flores, H.Reyes-Vivas, J.Oria-Herna G.Hernandez-Alcantara
compound source
Molecule: Triosephosphate Isomerase
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R
Synonym: Tim, Triose-Phosphate Isomerase
Ec: 5.3.1.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Giardia Intestinalis
Organism_taxid: 5741
Strain: Wb
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Plys
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3a
symmetry Space Group: P 1
R_factor 0.239 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
105.219 131.566 132.549 115.73 89.81 90.24
method X-Ray Diffractionresolution 2.70 Å
ligand
enzyme Isomerase E.C.5.3.1.1 BRENDA
note 4BI5 supersedes 2YC8
Gene
Ontology
ChainFunctionProcessComponent
S, F, T, N, K, E, Q, M, C, L, A, J, O, P, B, H, D, R, I, G


Primary referenceStructural and Functional Perturbation of Giardia lamblia Triosephosphate Isomerase by Modification of a Non-Catalytic, Non-Conserved Region., Hernandez-Alcantara G, Torres-Larios A, Enriquez-Flores S, Garcia-Torres I, Castillo-Villanueva A, Mendez ST, de la Mora-de la Mora I, Gomez-Manzo S, Torres-Arroyo A, Lopez-Velazquez G, Reyes-Vivas H, Oria-Hernandez J, PLoS One. 2013 Jul 22;8(7):e69031. doi: 10.1371/journal.pone.0069031. Print 2013. PMID:23894402
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (766 Kb) [Save to disk]
  • Biological Unit Coordinates (4bi5.pdb1.gz) 85 Kb
  • Biological Unit Coordinates (4bi5.pdb2.gz) 84 Kb
  • Biological Unit Coordinates (4bi5.pdb3.gz) 85 Kb
  • Biological Unit Coordinates (4bi5.pdb4.gz) 84 Kb
  • Biological Unit Coordinates (4bi5.pdb5.gz) 85 Kb
  • Biological Unit Coordinates (4bi5.pdb6.gz) 85 Kb
  • Biological Unit Coordinates (4bi5.pdb7.gz) 85 Kb
  • Biological Unit Coordinates (4bi5.pdb8.gz) 85 Kb
  • Biological Unit Coordinates (4bi5.pdb9.gz) 85 Kb
  • CSU: Contacts of Structural Units for 4BI5
  • Structure Factors (2441 Kb)
  • Retrieve 4BI5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BI5 from S2C, [Save to disk]
  • Re-refined 4bi5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BI5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BI5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BI5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bi5_P] [4bi5] [4bi5_O] [4bi5_D] [4bi5_T] [4bi5_H] [4bi5_M] [4bi5_Q] [4bi5_R] [4bi5_K] [4bi5_S] [4bi5_G] [4bi5_B] [4bi5_L] [4bi5_E] [4bi5_J] [4bi5_I] [4bi5_F] [4bi5_C] [4bi5_A] [4bi5_N]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4BI5
  • Community annotation for 4BI5 at PDBWiki (http://pdbwiki.org)

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