2YCR Transferase date Mar 16, 2011
title Crystal Structure Of Checkpoint Kinase 2 In Complex With Inh Pv976
authors G.T.Lountos, A.G.Jobson, J.E.Tropea, C.R.Self, Y.Pommier, R.H.Sho G.Zhang, D.S.Waugh
compound source
Molecule: Serinethreonine-Protein Kinase Chk2
Chain: A
Fragment: Catalytic Domain, Residues 210-531
Synonym: Checkpoint Kinase 2, Cds1
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdz1927
symmetry Space Group: P 32 2 1
R_factor 0.200 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.801 90.801 93.382 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand HCW, NO3 enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural characterization of inhibitor complexes with checkpoint kinase 2 (Chk2), a drug target for cancer therapy., Lountos GT, Jobson AG, Tropea JE, Self CR, Zhang G, Pommier Y, Shoemaker RH, Waugh DS, J Struct Biol. 2011 Dec;176(3):292-301. Epub 2011 Sep 22. PMID:21963792
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (2ycr.pdb1.gz) 191 Kb
  • LPC: Ligand-Protein Contacts for 2YCR
  • CSU: Contacts of Structural Units for 2YCR
  • Structure Factors (157 Kb)
  • Retrieve 2YCR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YCR from S2C, [Save to disk]
  • Re-refined 2ycr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2YCR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YCR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YCR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ycr_A] [2ycr]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2YCR: [S_TKc ] by SMART
  • Other resources with information on 2YCR
  • Community annotation for 2YCR at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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