2YEV Structure of caa3-type cytochrome oxidase date
authors Lyons, J.A., Aragao, D., Soulimane, T., Caffrey, M.
compound source
symmetry
R_factor
R_Free 0.2183
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.36
ligand 4AG, 5PL, 7E8, 7E9, CL, CU, CUA, FME, HAS, HEC, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D


E, B
  • cytochrome-c oxidase activit...


  • F, C


    Primary referenceStructural insights into electron transfer in caa3-type cytochrome oxidase., Lyons JA, Aragao D, Slattery O, Pisliakov AV, Soulimane T, Caffrey M, Nature. 2012 Jul 26;487(7408):514-8. PMID:22763450
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (796 Kb) [Save to disk]
  • Biological Unit Coordinates (2yev.pdb1.gz) 395 Kb
  • Biological Unit Coordinates (2yev.pdb2.gz) 394 Kb
  • LPC: Ligand-Protein Contacts for 2YEV
  • CSU: Contacts of Structural Units for 2YEV
  • Structure Factors (6973 Kb)
  • Retrieve 2YEV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YEV from S2C, [Save to disk]
  • Re-refined 2yev structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2YEV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YEV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YEV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yev_C] [2yev] [2yev_F] [2yev_B] [2yev_D] [2yev_A] [2yev_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2YEV
  • Community annotation for 2YEV at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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