2YGG Metal Binding Protein Transport Protein date Apr 15, 2011
title Complex Of Cambr And Cam
authors S.Koester, O.Yildiz
compound source
Molecule: Sodiumhydrogen Exchanger 1
Chain: A
Fragment: Cam Binding Region, Residues 622-689
Synonym: Apnh, Na(+)H(+) Antiporter\,Amiloride-Sensitive, Na(+)H(+) Exchanger 1, Nhe-1, Solute Carrier Family 9 Mem Nhe1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pgex

Molecule: Calmodulin
Chain: B
Synonym: Cam
Engineered: Yes

Organism_scientific: Rattus Norvegicus
Organism_taxid: 10116
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet
symmetry Space Group: C 1 2 1
R_factor 0.1734 R_Free 0.2317
crystal
cell
length a length b length c angle alpha angle beta angle gamma
200.700 38.350 34.100 90.00 91.35 90.00
method X-Ray Diffractionresolution 2.23 Å
ligand CA, MPD, MRD, TAM enzyme
note 2YGG is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • ion channel binding
  • establishment of protein loc...

  • Primary referenceStructure of human Na+/H+ exchanger NHE1 regulatory region in complex with CaM and Ca2+, Koester S, Pavkov-Keller T, Kuehlbrandt W, Yildiz O, J Biol Chem. 2011 Sep 19. PMID:21931166
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (2ygg.pdb1.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 2YGG
  • CSU: Contacts of Structural Units for 2YGG
  • Structure Factors (92 Kb)
  • Retrieve 2YGG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YGG from S2C, [Save to disk]
  • Re-refined 2ygg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2YGG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YGG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YGG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ygg_A] [2ygg_B] [2ygg]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2YGG: [EFh ] by SMART
  • Other resources with information on 2YGG
  • Community annotation for 2YGG at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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