2YHT Chaperone date May 06, 2011
title Crystal Structure Of Hfq Riboregulator From E. Coli (P1 Spac
authors J.Basquin, C.Sauter
compound source
Molecule: Protein Hfq
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Fragment: Sm-Like Fold, Residues 1-72
Synonym: Hf-1, Host Factor-I Protein, Hf-I
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Star
Expression_system_vector_type: Plasmid
Expression_system_vector: Petm11
symmetry Space Group: P 1
R_factor 0.181 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.200 61.200 53.100 82.60 87.30 60.00
method X-Ray Diffractionresolution 2.90 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Primary referenceSm-like proteins in Eubacteria: the crystal structure of the Hfq protein from Escherichia coli., Sauter C, Basquin J, Suck D, Nucleic Acids Res. 2003 Jul 15;31(14):4091-8. PMID:12853626
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk]
  • Biological Unit Coordinates (2yht.pdb1.gz) 61 Kb
  • Biological Unit Coordinates (2yht.pdb2.gz) 61 Kb
  • CSU: Contacts of Structural Units for 2YHT
  • Structure Factors (102 Kb)
  • Retrieve 2YHT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YHT from S2C, [Save to disk]
  • Re-refined 2yht structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2YHT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YHT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YHT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yht_H] [2yht_B] [2yht_G] [2yht_F] [2yht_K] [2yht] [2yht_L] [2yht_J] [2yht_D] [2yht_I] [2yht_A] [2yht_C] [2yht_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2YHT
  • Community annotation for 2YHT at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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