2YN9 Hydrolase date Oct 13, 2012
title Cryo-Em Structure Of Gastric H+,K+-Atpase With Bound Rubidiu
authors K.Abe, K.Tani, T.Friedrich, Y.Fujiyoshi
compound source
Molecule: Potassium-Transporting Atpase Alpha Chain 1
Chain: A
Synonym: Gastric H(+)K(+) Atpase Subunit Alpha, Proton Pum
Ec: 3.6.3.10
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
Organ: Stomach

Molecule: Potassium-Transporting Atpase Subunit Beta
Chain: B
Synonym: Gastric H(+)K(+) Atpase Subunit Beta, Proton Pump Chain, Gp60-90

Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
Organ: Stomach
symmetry Space Group: P 2 21 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
141.000 110.600 320.000 90.00 90.00 90.00
method Electron Crystallographyresolution 8.00 Å
ligand
enzyme Hydrolase E.C.3.6.3.10 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • potassium-transporting ATPas...
  • potassium:proton exchanging ...


  • B
  • ATPase activator activity
  • sodium:potassium-exchanging ...


  • Primary referenceCryo-EM structure of gastric H+,K+-ATPase with a single occupied cation-binding site., Abe K, Tani K, Friedrich T, Fujiyoshi Y, Proc Natl Acad Sci U S A. 2012 Nov 6;109(45):18401-6. doi:, 10.1073/pnas.1212294109. Epub 2012 Oct 22. PMID:23091039
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk]
  • Biological Unit Coordinates (2yn9.pdb1.gz) 168 Kb
  • CSU: Contacts of Structural Units for 2YN9
  • Retrieve 2YN9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YN9 from S2C, [Save to disk]
  • View 2YN9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YN9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YN9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yn9] [2yn9_B] [2yn9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2YN9: [Cation_ATPase_N ] by SMART
  • Other resources with information on 2YN9
  • Community annotation for 2YN9 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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