2ZKW Oxidoreductase date Mar 31, 2008
title Crystal Structure Of Human Cu-Zn Superoxide Dismutase Mutant Space Group P21
authors S.Yoshikawa, M.Kukimoto-Niino, K.Ito, L.Chen, Z.Q.Fu, J.Chrzas, B. M.Shirouzu, M.Urushitani, R.Takahashi, S.Yokoyama, Riken Struct Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Superoxide Dismutase [Cu-Zn]
Chain: A, B
Ec: 1.15.1.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sod1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p
symmetry Space Group: P 1 21 1
R_factor 0.193 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.616 46.233 52.818 90.00 94.42 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CU1, ZN enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
note 2ZKW supersedes 2YQV
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • superoxide dismutase activit...
  • protein binding
  • anterograde axonal transport...
  • retrograde axonal transport

  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (2zkw.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 2ZKW
  • CSU: Contacts of Structural Units for 2ZKW
  • Likely Quarternary Molecular Structure file(s) for 2ZKW
  • Structure Factors (237 Kb)
  • Retrieve 2ZKW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZKW from S2C, [Save to disk]
  • Re-refined 2zkw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZKW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZKW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ZKW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zkw_A] [2zkw] [2zkw_B]
  • SWISS-PROT database: [P00441]
  • Domain organization of [SODC_HUMAN] by SWISSPFAM
  • Other resources with information on 2ZKW
  • Community annotation for 2ZKW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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