2YSD Protein Binding date Apr 03, 2007
title Solution Structure Of The First Ww Domain From The Human Mem Associated Guanylate Kinase, Ww And Pdz Domain-Containing P Magi-1
authors S.Ohnishi, N.Tochio, S.Koshiba, T.Harada, S.Watanabe, T.Kigawa, S. Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Membrane-Associated Guanylate Kinase, Ww And Pdz Containing Protein 1;
Chain: A
Fragment: Ww Domain
Synonym: Bai1-Associated Protein 1, Bap-1, Membrane-Associa Guanylate Kinase Inverted 1, Magi-1, Atrophin-1-Interacting 3, Aip3, Ww Domain-Containing Protein 3, Wwp3, Trinucleotid Containing Gene 19 Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Magi1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P061024-03
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (275 Kb) [Save to disk]
  • Biological Unit Coordinates (2ysd.pdb1.gz) 14 Kb
  • CSU: Contacts of Structural Units for 2YSD
  • Retrieve 2YSD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YSD from S2C, [Save to disk]
  • View 2YSD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YSD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YSD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ysd_A] [2ysd]
  • SWISS-PROT database: [Q96QZ7]
  • Domain organization of [MAGI1_HUMAN] by SWISSPFAM
  • Domain found in 2YSD: [WW ] by SMART
  • Other resources with information on 2YSD
  • Community annotation for 2YSD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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