2YSZ Protein Binding date Apr 05, 2007
title Solution Structure Of The Chimera Of The C-Terminal Pid Doma Fe65l And The C-Terminal Tail Peptide Of App
authors H.Li, S.Koshiba, S.Watanabe, T.Harada, T.Kigawa, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Amyloid Beta A4 Precursor Protein-Binding Family And Amyloid Beta A4 Protein;
Chain: A
Fragment: Pid Domain And App Peptide
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P060710-04
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the C-terminal phosphotyrosine interaction domain of Fe65L1 complexed with the cytoplasmic tail of amyloid precursor protein reveals a novel peptide binding mode., Li H, Koshiba S, Hayashi F, Tochio N, Tomizawa T, Kasai T, Yabuki T, Motoda Y, Harada T, Watanabe S, Inoue M, Hayashizaki Y, Tanaka A, Kigawa T, Yokoyama S, J Biol Chem. 2008 Oct 3;283(40):27165-78. Epub 2008 Jul 23. PMID:18650440
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (910 Kb) [Save to disk]
  • Biological Unit Coordinates (2ysz.pdb1.gz) 45 Kb
  • CSU: Contacts of Structural Units for 2YSZ
  • Original NMR restraints for 2YSZ from PDB
  • Retrieve 2YSZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YSZ from S2C, [Save to disk]
  • View 2YSZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YSZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YSZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ysz_A] [2ysz]
  • SWISS-PROT database: [P12023] [Q9DBR4]
  • Domain organization of [A4_MOUSE] [APBB2_MOUSE] by SWISSPFAM
  • Domain found in 2YSZ: [PTB ] by SMART
  • Other resources with information on 2YSZ
  • Community annotation for 2YSZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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