2YV1	Ligase	date	Apr 06, 2007
title	Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain Fro Methanocaldococcus Jannaschii Dsm 2661
authors	H.Niwa, S.Kuramitsu, S.Yokoyama, Riken Structural Genomicsprot Initiative (Rsgi)
compound		source
Molecule: Succinyl-Coa Ligase [Adp-Forming] Subunit Alpha Chain: A Synonym: Succinyl-Coa Synthetase Subunit Alpha, Scs-Alpha Ec: 6.2.1.5 Engineered: Yes		Organism_scientific: Methanocaldococcus Jannaschii Organism_taxid: 243232 Strain: Dsm 2661 Gene: Sucd Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-21a
symmetry	Space Group: P 21 21 21	R_factor 0.205 R_Free 0.238
crystal cell	length a length b length c angle alpha angle beta angle gamma 65.882 65.044 65.958 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand		enzyme	Ligase E.C.6.2.1.5 BRENDA
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk] Biological Unit Coordinates (2yv1.pdb1.gz) 45 Kb CSU: Contacts of Structural Units for 2YV1 Likely Quarternary Molecular Structure file(s) for 2YV1 Structure Factors (240 Kb) Retrieve 2YV1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2YV1 from S2C, [Save to disk] Re-refined 2yv1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2YV1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2YV1

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2YV1, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2yv1_A] [2yv1] SWISS-PROT database: [Q58643] Domain organization of [SUCD_METJA] by SWISSPFAM Domain found in 2YV1: [CoA_binding ] by SMART

Other resources with information on 2YV1

Community annotation for 2YV1 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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