2YV7 Metal Transport date Apr 10, 2007
title Crystal Structure Of The Clic Homolog From Drosophila Melano
authors S.J.Harrop, D.R.Littler, P.M.G.Curmi
compound source
Molecule: Cg10997-Pa
Chain: A
Synonym: Ld46306p, Clic
Engineered: Yes
 Organism_scientific: Drosophila Melanogaster
Organism_common: Fruit Fly
Organism_taxid: 7227
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.216 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.393 63.451 114.122 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand CA, IOD enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • peroxidase activity
  • glutathione peroxidase activ...
  • chloride channel activity


    • Primary referenceComparison of vertebrate and invertebrate CLIC proteins: The crystal structures of Caenorhabditis elegans EXC-4 and Drosophila melanogaster DmCLIC., Littler DR, Harrop SJ, Brown LJ, Pankhurst GJ, Mynott AV, Luciani P, Mandyam RA, Mazzanti M, Tanda S, Berryman MA, Breit SN, Curmi PM, Proteins. 2007 Oct 23;71(1):364-378. PMID:17985355
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (2yv7.pdb1.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 2YV7
  • CSU: Contacts of Structural Units for 2YV7
  • Likely Quarternary Molecular Structure file(s) for 2YV7
  • Structure Factors (224 Kb)
  • Retrieve 2YV7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YV7 from S2C, [Save to disk]
  • Re-refined 2yv7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2YV7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2YV7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YV7, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yv7_A] [2yv7]
  • SWISS-PROT database: [Q9VY78]
  • Domain organization of [Q9VY78_DROME] by SWISSPFAM
    • Other resources with information on 2YV7
  • Community annotation for 2YV7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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