2YWZ Immune System date Apr 23, 2007
title Structure Of New Antigen Receptor Variable Domain From Shark
authors V.A.Streltsov
compound source
Molecule: New Antigen Receptor Variable Domain
Chain: A
Engineered: Yes
 Organism_scientific: Orectolobus Maculatus
Organism_common: Spotted Wobbegong
Organism_taxid: 168098
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Tg1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgc
symmetry Space Group: C 1 2 1
R_factor 0.185 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.252 50.442 46.731 90.00 104.43 90.00
method X-Ray Diffractionresolution 2.21 Å
Primary referenceShark IgNAR antibody mimotopes target a murine immunoglobulin through extended CDR3 loop structures., Simmons DP, Streltsov VA, Dolezal O, Hudson PJ, Coley AM, Foley M, Proll DF, Nuttall SD, Proteins. 2007 Oct 11;. PMID:17932913
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (2ywz.pdb1.gz) 20 Kb
  • CSU: Contacts of Structural Units for 2YWZ
  • Likely Quarternary Molecular Structure file(s) for 2YWZ
  • Structure Factors (98 Kb)
  • Retrieve 2YWZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YWZ from S2C, [Save to disk]
  • Re-refined 2ywz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2YWZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2YWZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YWZ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ywz] [2ywz_A]
  • SWISS-PROT database: [A9CBG5]
  • Domain organization of [A9CBG5_9CHON] by SWISSPFAM
  • Domain found in 2YWZ: [IG ] by SMART
    • Other resources with information on 2YWZ
  • Community annotation for 2YWZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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