2YXM Cell Adhesion date Apr 26, 2007
title Crystal Structure Of I-Set Domain Of Human Myosin Binding Pr
authors S.Kishishita, N.Ohsawa, K.Murayama, L.Chen, Z.Liu, T.Terada, M.Shi B.Wang, S.Yokoyama, Riken Structural Genomicsproteomics Init (Rsgi)
compound source
Molecule: Myosin-Binding Protein C, Slow-Type
Chain: A
Fragment: I-Set Domain
Synonym: Slow Mybp-C, C-Protein, Skeletal Muscle Slow Isofo
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pk050620-32
Other_details: Cell-Free Protein Synthesis
symmetry Space Group: P 41 21 2
R_factor 0.196 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.199 55.199 70.134 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.51 Å
note 2YXM is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (22 Kb) [Save to disk]
  • Biological Unit Coordinates (2yxm.pdb1.gz) 34 Kb
  • Biological Unit Coordinates (2yxm.pdb2.gz) 18 Kb
  • CSU: Contacts of Structural Units for 2YXM
  • Likely Quarternary Molecular Structure file(s) for 2YXM
  • Structure Factors (209 Kb)
  • Retrieve 2YXM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YXM from S2C, [Save to disk]
  • Re-refined 2yxm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2YXM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YXM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YXM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yxm] [2yxm_A]
  • SWISS-PROT database: [Q00872]
  • Domain organization of [MYPC1_HUMAN] by SWISSPFAM
  • Domain found in 2YXM: [IG ] by SMART
  • Other resources with information on 2YXM
  • Community annotation for 2YXM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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