2YY9 Transcription date Apr 27, 2007
title Crystal Structure Of Btb Domain From Mouse Hkr3
authors S.Kishishita, A.Nishino, K.Murayama, T.Terada, M.Shirouzu, S.Yoko Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Zinc Finger And Btb Domain-Containing Protein 48
Chain: A, B
Fragment: Btb Domain, Unp Residues 8-129
Synonym: Krueppel-Related Zinc Finger Protein 3, Protein Hk
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Hkr3
Expression_system: Cell-Free Protein Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Px060116-03
symmetry Space Group: P 65 2 2
R_factor 0.226 R_Free 0.289
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.821 67.821 216.487 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (2yy9.pdb1.gz) 34 Kb
  • CSU: Contacts of Structural Units for 2YY9
  • Likely Quarternary Molecular Structure file(s) for 2YY9
  • Structure Factors (67 Kb)
  • Retrieve 2YY9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YY9 from S2C, [Save to disk]
  • Re-refined 2yy9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2YY9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YY9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YY9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yy9_A] [2yy9_B] [2yy9]
  • SWISS-PROT database: [Q1H9T6]
  • Domain organization of [ZBT48_MOUSE] by SWISSPFAM
  • Domain found in 2YY9: [BTB ] by SMART
  • Other resources with information on 2YY9
  • Community annotation for 2YY9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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