2YZ5 Hydrolase date May 03, 2007
title Histidinol Phosphate Phosphatase Complexed With Phosphate
authors R.Omi
compound source
Molecule: Histidinol Phosphatase
Chain: A, B
Synonym: Histidinol Phosphate Phosphatase
Ec: 3.1.3.15
Engineered: Yes
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: P 21 21 2
R_factor 0.195 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.490 96.929 74.153 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand FE, GOL, PO4, ZN enzyme Hydrolase E.C.3.1.3.15 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • histidinol-phosphatase activ...


  • Primary referenceCrystal Structure of Monofunctional Histidinol Phosphate Phosphatase from Thermus thermophilus HB8(double dagger)., Omi R, Goto M, Miyahara I, Manzoku M, Ebihara A, Hirotsu K, Biochemistry. 2007 Nov 6;46(44):12618-27. Epub 2007 Oct 11. PMID:17929834
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (2yz5.pdb1.gz) 175 Kb
  • LPC: Ligand-Protein Contacts for 2YZ5
  • CSU: Contacts of Structural Units for 2YZ5
  • Likely Quarternary Molecular Structure file(s) for 2YZ5
  • Structure Factors (287 Kb)
  • Retrieve 2YZ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YZ5 from S2C, [Save to disk]
  • Re-refined 2yz5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2YZ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YZ5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YZ5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yz5_B] [2yz5] [2yz5_A]
  • SWISS-PROT database: [Q5SLG2]
  • Domain organization of [Q5SLG2_THET8] by SWISSPFAM
  • Domain found in 2YZ5: [POLIIIAc ] by SMART
  • Other resources with information on 2YZ5
  • Community annotation for 2YZ5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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