2YZO Hydrolase date May 06, 2007
title Crystal Structure Of Uncharacterized Conserved Protein From Maritima
authors N.Nakagawa, Y.Nakamura, Y.Bessho, S.Yokoyama, S.Kuramitsu, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Probable 2-Phosphosulfolactate Phosphatase
Chain: A, B
Ec: 3.1.3.71
Engineered: Yes
Organism_scientific: Thermotoga Maritima
Organism_taxid: 243274
Strain: Msb8
Gene: Comb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codonplus(De3)-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-21a
symmetry Space Group: C 2 2 21
R_factor 0.221 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.791 71.732 181.822 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand MLT enzyme Hydrolase E.C.3.1.3.71 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • 2-phosphosulfolactate phosph...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (2yzo.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 2YZO
  • CSU: Contacts of Structural Units for 2YZO
  • Likely Quarternary Molecular Structure file(s) for 2YZO
  • Structure Factors (482 Kb)
  • Retrieve 2YZO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YZO from S2C, [Save to disk]
  • Re-refined 2yzo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2YZO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YZO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YZO, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yzo_A] [2yzo] [2yzo_B]
  • SWISS-PROT database: [Q9WZQ4]
  • Domain organization of [COMB_THEMA] by SWISSPFAM
  • Other resources with information on 2YZO
  • Community annotation for 2YZO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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