2Z17 Protein Binding date May 08, 2007
title Crystal Structure Of Pdz Domain From Human Pleckstrin Homolo
authors S.Kishishita, A.Nishino, K.Murayama, T.Terada, M.Shirouzu, S.Yoko Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Pleckstrin Homology Sec7 And Coiled-Coil Domains- Protein;
Chain: A
Fragment: Pdz Domain
Synonym: Cytohesin-Binding Protein He, Cybr, Cytohesin Bind Regulator, Cytohesin-Interacting Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cell-Free Protein Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pk060110-70
symmetry Space Group: P 61 2 2
R_factor 0.244 R_Free 0.334
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.917 65.917 81.090 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (20 Kb) [Save to disk]
  • Biological Unit Coordinates (2z17.pdb1.gz) 30 Kb
  • CSU: Contacts of Structural Units for 2Z17
  • Likely Quarternary Molecular Structure file(s) for 2Z17
  • Structure Factors (50 Kb)
  • Retrieve 2Z17 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Z17 from S2C, [Save to disk]
  • Re-refined 2z17 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Z17 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Z17
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Z17, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2z17_A] [2z17]
  • SWISS-PROT database: [O60759]
  • Domain organization of [CYTIP_HUMAN] by SWISSPFAM
  • Domain found in 2Z17: [PDZ ] by SMART
  • Other resources with information on 2Z17
  • Community annotation for 2Z17 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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