2Z1B Lyase date May 08, 2007
title Crystal Structure Of 5-Aminolevulinic Acid Dehydratase (Alad Musculs
authors Y.Xie, H.Wang, M.Kawazoe, S.Kishishita, K.Murayama, C.Takemoto, T. M.Shirozu, S.Yokoyama, Riken Structural Genomicsproteomics I (Rsgi)
compound source
Molecule: Delta-Aminolevulinic Acid Dehydratase
Chain: A, B, C, D
Ec: 4.2.1.24
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Alad
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Px041202-30-Md01
Other_details: Cell-Free Protein Synthesis
symmetry Space Group: P 62 2 2
R_factor 0.278 R_Free 0.353
crystal
cell
length a length b length c angle alpha angle beta angle gamma
240.920 240.920 103.940 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.30 Å
ligand
enzyme Lyase E.C.4.2.1.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (190 Kb) [Save to disk]
  • Biological Unit Coordinates (2z1b.pdb1.gz) 91 Kb
  • Biological Unit Coordinates (2z1b.pdb2.gz) 95 Kb
  • Biological Unit Coordinates (2z1b.pdb3.gz) 93 Kb
  • CSU: Contacts of Structural Units for 2Z1B
  • Likely Quarternary Molecular Structure file(s) for 2Z1B
  • Structure Factors (213 Kb)
  • Retrieve 2Z1B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Z1B from S2C, [Save to disk]
  • Re-refined 2z1b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Z1B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Z1B
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Z1B, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2z1b_A] [2z1b] [2z1b_D] [2z1b_C] [2z1b_B]
  • SWISS-PROT database: [P10518]
  • Domain organization of [HEM2_MOUSE] by SWISSPFAM
  • Domain found in 2Z1B: [ALAD ] by SMART
  • Other resources with information on 2Z1B
  • Community annotation for 2Z1B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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