2Z2M Biosynthetic Protein date May 23, 2007
title Cefditoren-Acylated Penicillin-Binding Protein 2x (Pbp2x) Fr Streptococcus Pneumoniae
authors M.Yamada, T.Watanabe, Y.Takeuchi
compound source
Molecule: Penicillin-Binding Protein 2x
Chain: A, D
Fragment: Unp Residues 71-238
Synonym: Pbp-2x, Pbp2x
Engineered: Yes
Other_details: N-Terminal Domain
Organism_scientific: Streptococcus Pneumoniae
Organism_taxid: 1313
Gene: Pbpx
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b

Molecule: Penicillin-Binding Protein 2x
Chain: B, E
Fragment: Unp Residues 241-625
Synonym: Pbp-2x, Pbp2x
Engineered: Yes
Other_details: Transpeptidase Domain

Organism_scientific: Streptococcus Pneumoniae
Organism_taxid: 1313
Gene: Pbpx
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b

Molecule: Penicillin-Binding Protein 2x
Chain: C, F
Fragment: Unp Residues 626-750
Synonym: Pbp-2x, Pbp2x
Engineered: Yes
Other_details: C-Terminal Domain

Organism_scientific: Streptococcus Pneumoniae
Organism_taxid: 1313
Gene: Pbpx
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 21 21 2
R_factor 0.221 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.735 171.205 89.150 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand CDS, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D


E, B


Primary referenceCrystal Structure of Cefditoren Complexed with Streptococcus pneumoniae Penicillin-Binding Protein 2X: Structural Basis for Its High Antimicrobial Activity., Yamada M, Watanabe T, Miyara T, Baba N, Saito J, Takeuchi Y, Ohsawa F, Antimicrob Agents Chemother. 2007 Nov;51(11):3902-7. Epub 2007 Aug 27. PMID:17724158
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (194 Kb) [Save to disk]
  • Biological Unit Coordinates (2z2m.pdb1.gz) 101 Kb
  • Biological Unit Coordinates (2z2m.pdb2.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 2Z2M
  • CSU: Contacts of Structural Units for 2Z2M
  • Likely Quarternary Molecular Structure file(s) for 2Z2M
  • Retrieve 2Z2M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Z2M from S2C, [Save to disk]
  • View 2Z2M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Z2M
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Z2M, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2z2m] [2z2m_A] [2z2m_E] [2z2m_F] [2z2m_D] [2z2m_C] [2z2m_B]
  • SWISS-PROT database: [P59676]
  • Domain organization of [PBPX_STRR6] by SWISSPFAM
  • Other resources with information on 2Z2M
  • Community annotation for 2Z2M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science