2Z3H Hydrolase date Jun 04, 2007
title Crystal Structure Of Blasticidin S Deaminase (Bsd) Complexed Deaminohydroxy Blasticidin S
authors T.Kumasaka, M.Yamamoto, M.Furuichi, M.Nakasako, M.Kimura, I.Yamag T.Ueki
compound source
Molecule: Blasticidin-S Deaminase
Chain: A, B, C, D
Ec: 3.5.4.23
Engineered: Yes
Organism_scientific: Aspergillus Terreus
Organism_taxid: 33178
Strain: S-712
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-12a
symmetry Space Group: P 21 21 21
R_factor 0.172 R_Free 0.185
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.300 69.275 146.535 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand BLO, ZN enzyme Hydrolase E.C.3.5.4.23 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structures of blasticidin S deaminase (BSD): implications for dynamic properties of catalytic zinc., Kumasaka T, Yamamoto M, Furuichi M, Nakasako M, Teh AH, Kimura M, Yamaguchi I, Ueki T, J Biol Chem. 2007 Dec 21;282(51):37103-11. Epub 2007 Oct 23. PMID:17959604
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (2z3h.pdb1.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 2Z3H
  • CSU: Contacts of Structural Units for 2Z3H
  • Likely Quarternary Molecular Structure file(s) for 2Z3H
  • Structure Factors (1262 Kb)
  • Retrieve 2Z3H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Z3H from S2C, [Save to disk]
  • Re-refined 2z3h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Z3H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Z3H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Z3H, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2z3h_A] [2z3h_C] [2z3h_D] [2z3h_B] [2z3h]
  • SWISS-PROT database: [P0C2P0]
  • Domain organization of [BSD_ASPTE] by SWISSPFAM
  • Other resources with information on 2Z3H
  • Community annotation for 2Z3H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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