2Z3Q Cytokine Cytokine Receptor date Jun 05, 2007
title Crystal Structure Of The Il-15il-15ra Complex
authors M.Chirifu, Y.Yamagata, S.J.Davis, S.Ikemizu
compound source
Molecule: Interleukin-15
Chain: A, C
Synonym: Il-15
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il15
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32a

Molecule: Interleukin-15 Receptor Alpha Chain
Chain: B, D
Fragment: Il-15ra, Residues In Database 31-132
Synonym: Il-15r-Alpha, Il- 15ra
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il15ra
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32a
symmetry Space Group: P 21 21 2
R_factor 0.202 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.444 120.012 49.459 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
note 2Z3Q is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceCrystal structure of the IL-15-IL-15Ralpha complex, a cytokine-receptor unit presented in trans., Chirifu M, Hayashi C, Nakamura T, Toma S, Shuto T, Kai H, Yamagata Y, Davis SJ, Ikemizu S, Nat Immunol. 2007 Sep;8(9):1001-7. Epub 2007 Jul 22. PMID:17643103
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (2z3q.pdb1.gz) 33 Kb
  • Biological Unit Coordinates (2z3q.pdb2.gz) 34 Kb
  • CSU: Contacts of Structural Units for 2Z3Q
  • Likely Quarternary Molecular Structure file(s) for 2Z3Q
  • Retrieve 2Z3Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Z3Q from S2C, [Save to disk]
  • View 2Z3Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Z3Q
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Z3Q, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2z3q_D] [2z3q] [2z3q_B] [2z3q_A] [2z3q_C]
  • SWISS-PROT database: [Q13261] [P40933]
  • Domain organization of [I15RA_HUMAN] [IL15_HUMAN] by SWISSPFAM
  • Domain found in 2Z3Q: [CCP ] by SMART
  • Other resources with information on 2Z3Q
  • Community annotation for 2Z3Q at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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