2Z5P Metal Binding Protein date Jul 16, 2007
title Apo-Fr With Low Content Of Pd Ions
authors T.Ueno, K.Hirata, M.Abe, M.Suzuki, S.Abe, N.Shimizu, M.Yamamoto, M. Y.Watanabe
compound source
Molecule: Ferritin Light Chain
Chain: A
Synonym: Ferritin L Subunit
Engineered: Yes
Organism_scientific: Equus Caballus
Organism_common: Horse
Organism_taxid: 9796
Tissue: Spleen
Gene: Ftl
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Nova Blue
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmk2
symmetry Space Group: F 4 3 2
R_factor 0.169 R_Free 0.188
crystal
cell
length a length b length c angle alpha angle beta angle gamma
180.790 180.790 180.790 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand CD, GOL, PD, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceProcess of Accumulation of Metal Ions on the Interior Surface of apo-Ferritin: Crystal Structures of a Series of apo-Ferritins Containing Variable Quantities of Pd(II) Ions., Ueno T, Abe M, Hirata K, Abe S, Suzuki M, Shimizu N, Yamamoto M, Takata M, Watanabe Y, J Am Chem Soc. 2009 Mar 24. PMID:19317403
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (2z5p.pdb1.gz) 823 Kb
  • LPC: Ligand-Protein Contacts for 2Z5P
  • CSU: Contacts of Structural Units for 2Z5P
  • Likely Quarternary Molecular Structure file(s) for 2Z5P
  • Structure Factors (448 Kb)
  • Retrieve 2Z5P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Z5P from S2C, [Save to disk]
  • Re-refined 2z5p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Z5P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Z5P
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Z5P, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2z5p_A] [2z5p]
  • SWISS-PROT database: [P02791]
  • Domain organization of [FRIL_HORSE] by SWISSPFAM
  • Other resources with information on 2Z5P
  • Community annotation for 2Z5P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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