2Z62	Immune System	date	Jul 22, 2007
title	Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And Hagfis
authors	J.O.Lee, H.M.Kim, B.S.Park
compound		source
Molecule: Toll-Like Receptor 4, Variable Lymphocyte Recepto Chain: A Fragment: Tlr4, Unp Residues 27-228(Human), Vlrb.61, Unp Re 128-199(Inshore Hagfish); Synonym: Htoll, Cd284 Antigen, Tv3 Engineered: Yes		Organism_scientific: Homo Sapiens, Eptatretus Burgeri Organism_common: Human, Inshore Hagfish Organism_taxid: 9606, 7764 Gene: Tlr4, Vlrb.61 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_strain: Hi-5 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pvl1393
symmetry	Space Group: P 21 21 21	R_factor 0.190 R_Free 0.208
crystal cell	length a length b length c angle alpha angle beta angle gamma 43.945 54.214 116.637 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	BMA, FUL, NAG	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal Structure of the TLR4-MD-2 Complex with Bound Endotoxin Antagonist Eritoran., Kim HM, Park BS, Kim JI, Kim SE, Lee J, Oh SC, Enkhbayar P, Matsushima N, Lee H, Yoo OJ, Lee JO, Cell. 2007 Sep 7;130(5):906-17. PMID:17803912

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (2z62.pdb1.gz) 50 Kb LPC: Ligand-Protein Contacts for 2Z62 CSU: Contacts of Structural Units for 2Z62 Likely Quarternary Molecular Structure file(s) for 2Z62 Structure Factors (270 Kb) Retrieve 2Z62 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2Z62 from S2C, [Save to disk] Re-refined 2z62 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2Z62 in 3D

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Visual 3D analysis of 2Z62

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2Z62, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2z62_A] [2z62] SWISS-PROT database: [O00206] Belongs to the neat-domain containing methaemoglobin heme sequestration (n-mhs) family according to TCDB. Domain organization of [TLR4_HUMAN] by SWISSPFAM Domains found in 2Z62: [LRR] [LRRCT] [LRR_TYP ] by SMART

Other resources with information on 2Z62

Community annotation for 2Z62 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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