2Z8X Hydrolase date Sep 11, 2007
title Crystal Structure Of Extracellular Lipase From Pseudomonas S
authors C.Angkawidjaja, D.J.You, H.Matsumura, Y.Koga, K.Takano, S.Kanaya
compound source
Molecule: Lipase
Chain: A
Synonym: Extracellular Lipase
Ec: 3.1.1.3
Engineered: Yes
Organism_scientific: Pseudomonas Sp. Mis38
Organism_taxid: 91465
Strain: Mis38 Isolate
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Puc18
symmetry Space Group: P 1 21 1
R_factor 0.176 R_Free 0.194
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.972 84.300 86.849 90.00 96.32 90.00
method X-Ray Diffractionresolution 1.48 Å
ligand CA, ZN enzyme Hydrolase E.C.3.1.1.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of a family I.3 lipase from Pseudomonas sp. MIS38 in a closed conformation., Angkawidjaja C, You DJ, Matsumura H, Kuwahara K, Koga Y, Takano K, Kanaya S, FEBS Lett. 2007 Oct 30;581(26):5060-4. Epub 2007 Oct 1. PMID:17923123
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (2z8x.pdb1.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 2Z8X
  • CSU: Contacts of Structural Units for 2Z8X
  • Likely Quarternary Molecular Structure file(s) for 2Z8X
  • Structure Factors (1647 Kb)
  • Retrieve 2Z8X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Z8X from S2C, [Save to disk]
  • Re-refined 2z8x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Z8X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Z8X
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Z8X, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2z8x] [2z8x_A]
  • SWISS-PROT database: [Q9RBY1]
  • Domain organization of [Q9RBY1_9PSED] by SWISSPFAM
  • Other resources with information on 2Z8X
  • Community annotation for 2Z8X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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