2ZAM Protein Transport date Oct 08, 2007
title Crystal Structure Of Mouse Skd1vps4b Apo-Form
authors M.Inoue, M.Kawasaki, H.Kamikubo, M.Kataoka, R.Kato, T.Yoshimori, S.Wakatsuki
compound source
Molecule: Vacuolar Protein Sorting-Associating Protein 4b
Chain: A
Synonym: Protein Skd1, Suppressor Of K+, Transport Growth D
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Skd1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pproexhtb
symmetry Space Group: P 65
R_factor 0.250 R_Free 0.304
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.631 80.631 135.521 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.50 Å
Gene
Ontology
ChainFunctionProcessComponent
A
  • microtubule-severing ATPase ...


  • Primary referenceNucleotide-dependent conformational changes and assembly of the AAA ATPase SKD1/VPS4B., Inoue M, Kamikubo H, Kataoka M, Kato R, Yoshimori T, Wakatsuki S, Kawasaki M, Traffic. 2008 Sep 15. PMID:18796009
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (2zam.pdb1.gz) 49 Kb
  • CSU: Contacts of Structural Units for 2ZAM
  • Likely Quarternary Molecular Structure file(s) for 2ZAM
  • Structure Factors (93 Kb)
  • Retrieve 2ZAM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZAM from S2C, [Save to disk]
  • Re-refined 2zam structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZAM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZAM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ZAM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zam] [2zam_A]
  • SWISS-PROT database: [P46467]
  • Domain organization of [VPS4B_MOUSE] by SWISSPFAM
  • Domains found in 2ZAM: [AAA] [MIT ] by SMART
  • Other resources with information on 2ZAM
  • Community annotation for 2ZAM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science