2ZB5 Viral Protein date Oct 16, 2007
title Crystal Structure Of The Measles Virus Hemagglutinin (Comple Type)
authors T.Hashiguchi, M.Kajikawa, N.Maita, M.Takeda, K.Kuroki, K.Sasaki, D Y.Yanagi, K.Maenaka
compound source
Molecule: Hemagglutinin Protein
Chain: A
Fragment: Head Domain, Unp Residues 149-617
Engineered: Yes
Mutation: Yes
Organism_scientific: Measles Virus Strain Edmonston-B
Organism_taxid: 70146
Strain: Edmonston B
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t
Expression_system_organ: Kidney
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pca7sec
symmetry Space Group: P 41 21 2
R_factor 0.227 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
134.523 134.523 99.251 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of measles virus hemagglutinin provides insight into effective vaccines., Hashiguchi T, Kajikawa M, Maita N, Takeda M, Kuroki K, Sasaki K, Kohda D, Yanagi Y, Maenaka K, Proc Natl Acad Sci U S A. 2007 Dec 4;104(49):19535-40. Epub 2007 Nov 14. PMID:18003910
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (2zb5.pdb1.gz) 130 Kb
  • LPC: Ligand-Protein Contacts for 2ZB5
  • CSU: Contacts of Structural Units for 2ZB5
  • Likely Quarternary Molecular Structure file(s) for 2ZB5
  • Structure Factors (157 Kb)
  • Retrieve 2ZB5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZB5 from S2C, [Save to disk]
  • Re-refined 2zb5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZB5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZB5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ZB5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zb5_A] [2zb5]
  • SWISS-PROT database: [P08362]
  • Domain organization of [HEMA_MEASE] by SWISSPFAM
  • Other resources with information on 2ZB5
  • Community annotation for 2ZB5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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