2ZBD	Hydrolase	date	Oct 20, 2007
title	Crystal Structure Of The Sr Calcium Pump With Bound Aluminiu Fluoride, Adp And Calcium
authors	C.Toyoshima, H.Nomura, T.Tsuda, H.Ogawa, Y.Norimatsu
compound		source
Molecule: Sarcoplasmicendoplasmic Reticulum Calcium Atpase Chain: A Synonym: Calcium Pump 1, Serca1, Sr Ca(2+)-Atpase 1, Calciu Transporting Atpase Sarcoplasmic Reticulum Type, Fast Twitc Muscle Isoform, Endoplasmic Reticulum Class 12 Ca(2+) Atpa Ec: 3.6.3.8		Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 Tissue: Skeletal Muscle (White)
symmetry	Space Group: C 1 2 1	R_factor 0.246 R_Free 0.271
crystal cell	length a length b length c angle alpha angle beta angle gamma 162.900 75.100 152.100 90.00 109.30 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	ACE, ADP, ALF, CA, MG, PC1	enzyme	Hydrolase E.C.3.6.3.8 BRENDA
note	2ZBD supersedes 2Z9R, 1WPE
Gene Ontology	Chain Function Process Component A
Primary reference	Lumenal gating mechanism revealed in calcium pump crystal structures with phosphate analogues., Toyoshima C, Nomura H, Tsuda T, Nature. 2004 Nov 18;432(7015):361-8. Epub 2004 Sep 26. PMID:15448704

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (164 Kb) [Save to disk] Biological Unit Coordinates (2zbd.pdb1.gz) 157 Kb LPC: Ligand-Protein Contacts for 2ZBD CSU: Contacts of Structural Units for 2ZBD Likely Quarternary Molecular Structure file(s) for 2ZBD Retrieve 2ZBD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2ZBD from S2C, [Save to disk]

View 2ZBD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2ZBD

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2ZBD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2zbd] [2zbd_A] SWISS-PROT database: [P04191] Belongs to the p-type atpase (p-atpase) superfamily according to TCDB. Domain organization of [AT2A1_RABIT] by SWISSPFAM Domain found in 2ZBD: [Cation_ATPase_N ] by SMART

Other resources with information on 2ZBD

Community annotation for 2ZBD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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