2ZC1 Hydrolase date Nov 02, 2007
title Organophosphorus Hydrolase From Deinococcus Radiodurans
authors S.D.Larsen, R.Hawwa, K.Ratia, B.D.Santarsiero, A.D.Mesecar
compound source
Molecule: Phosphotriesterase
Chain: A
Synonym: Organophosphorus Hydrolase
Ec: 3.1.8.1
Engineered: Yes
 Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299
Strain: R1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 31 2 1
R_factor 0.182 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.843 60.843 207.694 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand BR, CO, KCX enzyme Hydrolase E.C.3.1.8.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (2zc1.pdb1.gz) 61 Kb
  • Biological Unit Coordinates (2zc1.pdb2.gz) 120 Kb
  • LPC: Ligand-Protein Contacts for 2ZC1
  • CSU: Contacts of Structural Units for 2ZC1
  • Likely Quarternary Molecular Structure file(s) for 2ZC1
  • Structure Factors (1257 Kb)
  • Retrieve 2ZC1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZC1 from S2C, [Save to disk]
  • Re-refined 2zc1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2ZC1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2ZC1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ZC1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e2zc1, region C:1-168,C:233-251 [Jmol] [rasmolscript] [script source]
        - Domain d1w2zc1, region C:207-647 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zc1] [2zc1_A]
  • SWISS-PROT database: [Q9RVU2]
  • Domain organization of [Q9RVU2_DEIRA] by SWISSPFAM
    • Other resources with information on 2ZC1
  • Community annotation for 2ZC1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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