2ZDU Transferase date Nov 27, 2007
title Crystal Structure Of Human Jnk3 Complexed With An Isoquinolo Inhibitor
authors S.Sogabe, T.Ohra, F.Itoh, N.Habuka, A.Fujishima
compound source
Molecule: Mitogen-Activated Protein Kinase 10
Chain: A
Fragment: Residues Unp 39-402
Synonym: Stress-Activated Protein Kinase Jnk3, C-Jun N-Term Kinase 3, Map Kinase P49 3f12;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21alpha
symmetry Space Group: P 21 21 21
R_factor 0.241 R_Free 0.319
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.956 70.267 107.947 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand 446 BindingDB enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery, synthesis and biological evaluation of isoquinolones as novel and highly selective JNK inhibitors (1)., Asano Y, Kitamura S, Ohra T, Aso K, Igata H, Tamura T, Kawamoto T, Tanaka T, Sogabe S, Matsumoto S, Yamaguchi M, Kimura H, Itoh F, Bioorg Med Chem. 2008 Apr 15;16(8):4715-32. Epub 2008 Feb 13. PMID:18313304
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (2zdu.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 2ZDU
  • CSU: Contacts of Structural Units for 2ZDU
  • Likely Quarternary Molecular Structure file(s) for 2ZDU
  • Structure Factors (122 Kb)
  • Retrieve 2ZDU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZDU from S2C, [Save to disk]
  • Re-refined 2zdu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZDU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZDU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ZDU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zdu_A] [2zdu]
  • SWISS-PROT database: [P53779]
  • Domain organization of [MK10_HUMAN] by SWISSPFAM
  • Domain found in 2ZDU: [S_TKc ] by SMART
  • Other resources with information on 2ZDU
  • Community annotation for 2ZDU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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