2ZEQ	Ligase	date	Dec 14, 2007
title	Crystal Structure Of Ubiquitin-Like Domain Of Murine Parkin
authors	K.Tomoo
compound		source
Molecule: E3 Ubiquitin-Protein Ligase Parkin Chain: A Fragment: Ubiquitin-Like Domain Ec: 6.3.2.- Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28b
symmetry	Space Group: P 61	R_factor 0.195 R_Free 0.244
crystal cell	length a length b length c angle alpha angle beta angle gamma 46.060 46.060 65.150 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.65 Å
ligand		enzyme	Ligase E.C.6.3.2 BRENDA
Primary reference	Crystal structure and molecular dynamics simulation of ubiquitin-like domain of murine parkin., Tomoo K, Mukai Y, In Y, Miyagawa H, Kitamura K, Yamano A, Shindo H, Ishida T, Biochim Biophys Acta. 2008 Jul-Aug;1784(7-8):1059-67. Epub 2008 Apr 25. PMID:18485927

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (18 Kb) [Save to disk] Biological Unit Coordinates (2zeq.pdb1.gz) 14 Kb CSU: Contacts of Structural Units for 2ZEQ Likely Quarternary Molecular Structure file(s) for 2ZEQ Structure Factors (51 Kb) Retrieve 2ZEQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2ZEQ from S2C, [Save to disk] Re-refined 2zeq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2ZEQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2ZEQ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2ZEQ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2zeq] [2zeq_A] SWISS-PROT database: [Q9WVS6] Domain organization of [PRKN2_MOUSE] by SWISSPFAM Domain found in 2ZEQ: [UBQ ] by SMART

Other resources with information on 2ZEQ

Community annotation for 2ZEQ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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