2ZGG De Novo Protein date Jan 21, 2008
title Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold
authors M.A.Mcdonough, C.J.Schofield
compound source
Molecule: 3 Repeat Synthetic Ankyrin
Chain: A
Engineered: Yes
Synthetic: Yes
Other_details: Synthetically Designed Construct
symmetry Space Group: P 31 2 1
R_factor 0.212 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.959 48.959 79.042 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand CD, CO enzyme
Primary referenceAsparagine beta-hydroxylation stabilizes the ankyrin repeat domain fold., Kelly L, McDonough MA, Coleman ML, Ratcliffe PJ, Schofield CJ, Mol Biosyst. 2009 Jan;5(1):52-8. Epub 2008 Oct 29. PMID:19081931
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (21 Kb) [Save to disk]
  • Biological Unit Coordinates (2zgg.pdb1.gz) 16 Kb
  • Biological Unit Coordinates (2zgg.pdb2.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 2ZGG
  • CSU: Contacts of Structural Units for 2ZGG
  • Likely Quarternary Molecular Structure file(s) for 2ZGG
  • Structure Factors (105 Kb)
  • Retrieve 2ZGG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZGG from S2C, [Save to disk]
  • Re-refined 2zgg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZGG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZGG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ZGG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zgg] [2zgg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2ZGG: [ANK ] by SMART
  • Other resources with information on 2ZGG
  • Community annotation for 2ZGG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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