2ZGH	Hydrolase	date	Jan 22, 2008
title	Crystal Structure Of Active Granzyme M Bound To Its Product
authors	L.F.Wu, L.Wang, G.Q.Hua, K.Liu, Y.J.Zhai, F.Sun, Z.S.Fan
compound		source
Molecule: Granzyme M Chain: A Synonym: Met-Ase, Natural Killer Cell Granular Protease, Hu Met-1 Serine Protease; Ec: 3.4.21.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Gzmm, Met1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet26b-Gzmm
Molecule: Ssgkvpl Chain: B Engineered: Yes		Synthetic: Yes Other_details: Peptide Synthesis
symmetry	Space Group: P 31 2 1	R_factor 0.212 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 74.598 74.598 112.870 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.17 Å
ligand	SO4	enzyme	Hydrolase E.C.3.4.21 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural basis for proteolytic specificity of the human apoptosis-inducing granzyme M., Wu L, Wang L, Hua G, Liu K, Yang X, Zhai Y, Bartlam M, Sun F, Fan Z, J Immunol. 2009 Jul 1;183(1):421-9. PMID:19542453

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk] Biological Unit Coordinates (2zgh.pdb1.gz) 40 Kb LPC: Ligand-Protein Contacts for 2ZGH CSU: Contacts of Structural Units for 2ZGH Likely Quarternary Molecular Structure file(s) for 2ZGH Structure Factors (110 Kb) Retrieve 2ZGH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2ZGH from S2C, [Save to disk] Re-refined 2zgh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2ZGH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2ZGH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2ZGH, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2zgh] [2zgh_A] [2zgh_B] SWISS-PROT database: [P51124] Domain organization of [GRAM_HUMAN] by SWISSPFAM Domain found in 2ZGH: [Tryp_SPc ] by SMART

Other resources with information on 2ZGH

Community annotation for 2ZGH at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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