2ZHX Hydrolase Hydrolase Inhibitor date Feb 11, 2008
title Crystal Structure Of Uracil-Dna Glycosylase From Mycobacteri Tuberculosis In Complex With A Proteinaceous Inhibitor
authors P.S.Kaushal, R.K.Talawar, P.D.V.Krishna, U.Varshney, M.Vijayan
compound source
Molecule: Uracil-Dna Glycosylase
Chain: A, C, E, G, I, K, M
Synonym: Udg
Ec: 3.2.2.3
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis H37rv
Organism_taxid: 83332
Strain: H37rv
Gene: Ung, Rv2976c
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prsetb Mtuudg-Ugi

Molecule: Uracil-Dna Glycosylase Inhibitor
Chain: B, D, F, H, J, L, N
Engineered: Yes

Organism_scientific: Bacillus Phage Pbs2
Organism_taxid: 10684
Gene: Ugi, J04434
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prsetb Mtuudg-Ugi
symmetry Space Group: C 1 2 1
R_factor 0.234 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
201.143 64.274 203.677 90.00 109.72 90.00
method X-Ray Diffractionresolution 3.10 Å
ligand
enzyme Hydrolase E.C.3.2.2.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, K, E, M, C, I, G


F, J, N, B, H, D, L


Primary referenceUnique features of the structure and interactions of mycobacterial uracil-DNA glycosylase: structure of a complex of the Mycobacterium tuberculosis enzyme in comparison with those from other sources., Kaushal PS, Talawar RK, Krishna PD, Varshney U, Vijayan M, Acta Crystallogr D Biol Crystallogr. 2008 May;64(Pt 5):551-60. Epub 2008, Apr 19. PMID:18453691
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (338 Kb) [Save to disk]
  • Biological Unit Coordinates (2zhx.pdb1.gz) 52 Kb
  • Biological Unit Coordinates (2zhx.pdb2.gz) 52 Kb
  • Biological Unit Coordinates (2zhx.pdb3.gz) 51 Kb
  • Biological Unit Coordinates (2zhx.pdb4.gz) 51 Kb
  • Biological Unit Coordinates (2zhx.pdb5.gz) 50 Kb
  • Biological Unit Coordinates (2zhx.pdb6.gz) 50 Kb
  • Biological Unit Coordinates (2zhx.pdb7.gz) 50 Kb
  • CSU: Contacts of Structural Units for 2ZHX
  • Likely Quarternary Molecular Structure file(s) for 2ZHX
  • Structure Factors (715 Kb)
  • Retrieve 2ZHX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZHX from S2C, [Save to disk]
  • Re-refined 2zhx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZHX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZHX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ZHX, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zhx_I] [2zhx_C] [2zhx_N] [2zhx_H] [2zhx_G] [2zhx_J] [2zhx_L] [2zhx_E] [2zhx_F] [2zhx_D] [2zhx_B] [2zhx_K] [2zhx] [2zhx_M] [2zhx_A]
  • SWISS-PROT database: [P14739] [P67071]
  • Domain organization of [UNGI_BPPB2] [UNG_MYCTU] by SWISSPFAM
  • Domains found in 2ZHX: [UDG] [UreE_C ] by SMART
  • Other resources with information on 2ZHX
  • Community annotation for 2ZHX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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