2ZIK Hydrolase date Feb 18, 2008
title Crystal Structure Of Human Lysozyme From Pichia Pastoris
authors T.Tamada, R.Kuroki, T.Koshiba
compound source
Molecule: Lysozyme C
Chain: A
Synonym: 1,4-Beta-N-Acetylmuramidase C
Ec: 3.2.1.17
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lyz, Lzm
Expression_system: Pichia Pastoris
Expression_system_common: Fungi
Expression_system_taxid: 4922
Expression_system_strain: Gs115
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppic9hly
symmetry Space Group: P 21 21 21
R_factor 0.181 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.000 61.800 34.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.81 Å
ligand NA enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (2zik.pdb1.gz) 23 Kb
  • LPC: Ligand-Protein Contacts for 2ZIK
  • CSU: Contacts of Structural Units for 2ZIK
  • Likely Quarternary Molecular Structure file(s) for 2ZIK
  • Structure Factors (74 Kb)
  • Retrieve 2ZIK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZIK from S2C, [Save to disk]
  • Re-refined 2zik structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZIK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZIK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ZIK, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zik_A] [2zik]
  • SWISS-PROT database: [P61626]
  • Domain organization of [LYSC_HUMAN] by SWISSPFAM
  • Domain found in 2ZIK: [LYZ1 ] by SMART
  • Other resources with information on 2ZIK
  • Community annotation for 2ZIK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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