2ZJS	Protein Transport Immune System	date	Mar 08, 2008
title	Crystal Structure Of Secye Translocon From Thermus Thermophi Fab Fragment
authors	T.Tsukazaki, H.Mori, S.Fukai, R.Ishitani, A.Perederina, D.G.Vassy K.Ito, O.Nureki
compound		source
Molecule: Preprotein Translocase Secy Subunit Chain: Y Fragment: Residues 1-434 Engineered: Yes Mutation: Yes		Organism_scientific: Thermus Thermophilus Organism_taxid: 274 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Ptv118n
Molecule: Preprotein Translocase Sece Subunit Chain: E Engineered: Yes		Organism_scientific: Thermus Thermophilus Organism_taxid: 274 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Ptv118n
Molecule: Fab56 (Heavy Chain) Chain: H Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Cell_line: Hybridoma
Molecule: Fab56 (Light Chain) Chain: L Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Cell_line: Hybridoma
symmetry	Space Group: C 1 2 1	R_factor 0.244 R_Free 0.280
crystal cell	length a length b length c angle alpha angle beta angle gamma 189.096 103.073 78.005 90.00 105.18 90.00
method	X-Ray Diffraction	resolution	3.20 Å
ligand	ZN	enzyme
Gene Ontology	Chain Function Process Component E Y
Primary reference	Conformational transition of Sec machinery inferred from bacterial SecYE structures., Tsukazaki T, Mori H, Fukai S, Ishitani R, Mori T, Dohmae N, Perederina A, Sugita Y, Vassylyev DG, Ito K, Nureki O, Nature. 2008 Oct 16;455(7215):988-91. PMID:18923527

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk] Biological Unit Coordinates (2zjs.pdb1.gz) 73 Kb Biological Unit Coordinates (2zjs.pdb2.gz) 67 Kb Biological Unit Coordinates (2zjs.pdb3.gz) 136 Kb Biological Unit Coordinates (2zjs.pdb4.gz) 142 Kb Biological Unit Coordinates (2zjs.pdb5.gz) 131 Kb LPC: Ligand-Protein Contacts for 2ZJS CSU: Contacts of Structural Units for 2ZJS Likely Quarternary Molecular Structure file(s) for 2ZJS Structure Factors (318 Kb) Retrieve 2ZJS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2ZJS from S2C, [Save to disk] Re-refined 2zjs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2ZJS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2ZJS

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2ZJS, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2zjs_Y] [2zjs_E] [2zjs_L] [2zjs_H] [2zjs] SWISS-PROT database: [P01837] [P01644] [Q5SHQ8] [P38383] Domain organization of [IGKC_MOUSE] [KV5AB_MOUSE] [Q5SHQ8_THET8] [SECE_THET8] by SWISSPFAM Domains found in 2ZJS: [IG_like] [IGv ] by SMART

Other resources with information on 2ZJS

Community annotation for 2ZJS at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---