2ZK1	Transcription	date	Mar 12, 2008
title	Human Peroxisome Proliferator-Activated Receptor Gamma Ligan Domain Complexed With 15-Deoxy-Delta12,14-Prostaglandin J2
authors	T.Waku, T.Shiraki, T.Oyama, Y.Fujimoto, K.Morikawa
compound		source
Molecule: Peroxisome Proliferator-Activated Receptor Gamma Chain: A, B Fragment: Ligand Binding Domain Synonym: Ppar-Gamma, Nuclear Receptor Subfamily 1 Group C M Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pparg Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: C 1 2 1	R_factor 0.246 R_Free 0.307
crystal cell	length a length b length c angle alpha angle beta angle gamma 93.498 60.810 118.203 90.00 103.02 90.00
method	X-Ray Diffraction	resolution	2.61 Å
ligand	PTG	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural insight into PPARgamma activation through covalent modification with endogenous fatty acids., Waku T, Shiraki T, Oyama T, Fujimoto Y, Maebara K, Kamiya N, Jingami H, Morikawa K, J Mol Biol. 2009 Jan 9;385(1):188-99. Epub 2008 Oct 19. PMID:18977231

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk] Biological Unit Coordinates (2zk1.pdb1.gz) 87 Kb Biological Unit Coordinates (2zk1.pdb2.gz) 88 Kb LPC: Ligand-Protein Contacts for 2ZK1 CSU: Contacts of Structural Units for 2ZK1 Likely Quarternary Molecular Structure file(s) for 2ZK1 Structure Factors (254 Kb) Retrieve 2ZK1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2ZK1 from S2C, [Save to disk] Re-refined 2zk1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2ZK1 in 3D

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Visual 3D analysis of 2ZK1

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2ZK1, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2zk1_A] [2zk1_B] [2zk1] SWISS-PROT database: [P37231] Domain organization of [PPARG_HUMAN] by SWISSPFAM Domain found in 2ZK1: [HOLI ] by SMART

Other resources with information on 2ZK1

Community annotation for 2ZK1 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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