2ZKC Transcription date Mar 14, 2008
title Crystal Structure Of Human Estrogen-Related Receptor Gamma L Binding Domain Complex With Bisphenol Z
authors A.Matsushima, Y.Kakuta, T.Teramoto, Y.Shimohigashi
compound source
Molecule: Estrogen-Related Receptor Gamma
Chain: A
Fragment: Ligand Binding Domain, Unp Residues 222-459
Synonym: Estrogen Receptor-Related Protein 3, Err Gamma-2, Receptor Subfamily 3 Group B Member 3;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1
symmetry Space Group: P 41 21 2
R_factor 0.197 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.839 63.839 135.894 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand BPZ, GOL enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (2zkc.pdb1.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 2ZKC
  • CSU: Contacts of Structural Units for 2ZKC
  • Likely Quarternary Molecular Structure file(s) for 2ZKC
  • Structure Factors (450 Kb)
  • Retrieve 2ZKC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZKC from S2C, [Save to disk]
  • Re-refined 2zkc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZKC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZKC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ZKC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zkc_A] [2zkc]
  • SWISS-PROT database: [P62508]
  • Domain organization of [ERR3_HUMAN] by SWISSPFAM
  • Domain found in 2ZKC: [HOLI ] by SMART
  • Other resources with information on 2ZKC
  • Community annotation for 2ZKC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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