2ZKY	Oxidoreductase	date	Mar 31, 2008
title	Crystal Structure Of Human Cu-Zn Superoxide Dismutase Mutant
authors	S.Yoshikawa, M.Kukimoto-Niino, K.Ito, M.Shirouzu, M.Urushitani, R.Takahashi, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound		source
Molecule: Superoxide Dismutase [Cu-Zn] Chain: A, B, C, D, E, F, G, H, I, J Ec: 1.15.1.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sod1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex6p
symmetry	Space Group: C 2 2 21	R_factor 0.189 R_Free 0.235
crystal cell	length a length b length c angle alpha angle beta angle gamma 165.238 204.509 144.819 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	ZN	enzyme	Oxidoreductase E.C.1.15.1.1 BRENDA
note	2ZKY supersedes 2YQX
Gene Ontology	Chain Function Process Component F, A, J, E, B, H, C, D, I, G superoxide dismutase activit... protein binding anterograde axonal transport... retrograde axonal transport

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (236 Kb) [Save to disk] Biological Unit Coordinates (2zky.pdb1.gz) 49 Kb Biological Unit Coordinates (2zky.pdb2.gz) 50 Kb Biological Unit Coordinates (2zky.pdb3.gz) 49 Kb Biological Unit Coordinates (2zky.pdb4.gz) 49 Kb Biological Unit Coordinates (2zky.pdb5.gz) 49 Kb LPC: Ligand-Protein Contacts for 2ZKY CSU: Contacts of Structural Units for 2ZKY Likely Quarternary Molecular Structure file(s) for 2ZKY Structure Factors (996 Kb) Retrieve 2ZKY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2ZKY from S2C, [Save to disk] Re-refined 2zky structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2ZKY in 3D

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Visual 3D analysis of 2ZKY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2ZKY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2zky_I] [2zky_D] [2zky_B] [2zky_C] [2zky_E] [2zky] [2zky_G] [2zky_F] [2zky_H] [2zky_J] [2zky_A] SWISS-PROT database: [P00441] Domain organization of [SODC_HUMAN] by SWISSPFAM

Other resources with information on 2ZKY

Community annotation for 2ZKY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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