2ZM3 Transferase date Apr 10, 2008
title Complex Structure Of Insulin-Like Growth Factor Receptor And Isoquinolinedione Inhibitor
authors W.Xu, S.C.Mayer, F.Boschelli, M.Johnson, B.Dwyer
compound source
Molecule: Insulin-Like Growth Factor 1 Receptor
Chain: A, B, C, D
Fragment: Unp Residues 981-1286, Igf-1r Kinase Domain
Synonym: Insulin-Like Growth Factor I Receptor, Igf-I Recep Antigen;
Ec: 2.7.10.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Igf1r
Expression_system_vector_type: Baculovirus
symmetry Space Group: C 1 2 1
R_factor 0.201 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
137.725 135.962 86.380 90.00 114.27 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand 575, PTR BindingDB enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceLead identification to generate isoquinolinedione inhibitors of insulin-like growth factor receptor (IGF-1R) for potential use in cancer treatment., Mayer SC, Banker AL, Boschelli F, Di L, Johnson M, Kenny CH, Krishnamurthy G, Kutterer K, Moy F, Petusky S, Ravi M, Tkach D, Tsou HR, Xu W, Bioorg Med Chem Lett. 2008 Jun 15;18(12):3641-5. Epub 2008 Apr 25. PMID:18501599
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (208 Kb) [Save to disk]
  • Biological Unit Coordinates (2zm3.pdb1.gz) 54 Kb
  • Biological Unit Coordinates (2zm3.pdb2.gz) 53 Kb
  • Biological Unit Coordinates (2zm3.pdb3.gz) 53 Kb
  • Biological Unit Coordinates (2zm3.pdb4.gz) 53 Kb
  • Biological Unit Coordinates (2zm3.pdb5.gz) 400 Kb
  • LPC: Ligand-Protein Contacts for 2ZM3
  • CSU: Contacts of Structural Units for 2ZM3
  • Likely Quarternary Molecular Structure file(s) for 2ZM3
  • Structure Factors (526 Kb)
  • Retrieve 2ZM3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZM3 from S2C, [Save to disk]
  • Re-refined 2zm3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZM3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZM3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ZM3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zm3_B] [2zm3_D] [2zm3_C] [2zm3_A] [2zm3]
  • SWISS-PROT database: [P08069]
  • Domain organization of [IGF1R_HUMAN] by SWISSPFAM
  • Domain found in 2ZM3: [TyrKc ] by SMART
  • Other resources with information on 2ZM3
  • Community annotation for 2ZM3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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