2ZNN Transcription date Apr 30, 2008
title Human Ppar Alpha Ligand Binding Domain In Complex With A Syn Agonist Tipp703
authors T.Oyama, K.Toyota, J.Kasuga, H.Miyachi, K.Morikawa
compound source
Molecule: Peroxisome Proliferator-Activated Receptor Alpha
Chain: A
Fragment: Ligand Binding Domain
Synonym: Ppar-Alpha, Nuclear Receptor Subfamily 1 Group C M
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ppara, Nr1c1, Ppar
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 1 21 1
R_factor 0.214 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.370 61.530 53.120 90.00 106.29 90.00
method X-Ray Diffractionresolution 2.01 Å
ligand S44 BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAdaptability and selectivity of human peroxisome proliferator-activated receptor (PPAR) pan agonists revealed from crystal structures., Oyama T, Toyota K, Waku T, Hirakawa Y, Nagasawa N, Kasuga JI, Hashimoto Y, Miyachi H, Morikawa K, Acta Crystallogr D Biol Crystallogr. 2009 Aug;65(Pt 8):786-95. Epub 2009, Jul 10. PMID:19622862
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (2znn.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 2ZNN
  • CSU: Contacts of Structural Units for 2ZNN
  • Likely Quarternary Molecular Structure file(s) for 2ZNN
  • Structure Factors (230 Kb)
  • Retrieve 2ZNN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZNN from S2C, [Save to disk]
  • Re-refined 2znn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZNN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZNN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ZNN, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2znn] [2znn_A]
  • SWISS-PROT database: [Q07869]
  • Domain organization of [PPARA_HUMAN] by SWISSPFAM
  • Domain found in 2ZNN: [HOLI ] by SMART
  • Other resources with information on 2ZNN
  • Community annotation for 2ZNN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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