2ZOQ	Transferase	date	Jun 01, 2008
title	Structural Dissection Of Human Mitogen-Activated Kinase Erk1
authors	T.Kinoshita, T.Tada, S.Nakae, I.Yoshida
compound		source
Molecule: Mitogen-Activated Protein Kinase 3 Chain: A, B Synonym: Extracellular Signal-Regulated Kinase 1, Erk-1, In Stimulated Map2 Kinase, Map Kinase 1, Mapk 1, P44-Erk1, Ert Mapk, Microtubule-Associated Protein 2 Kinase; Ec: 2.7.11.24 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mapk3, Erk1, Prkm3 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm109 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-6p
symmetry	Space Group: P 1 21 1	R_factor 0.249 R_Free 0.267
crystal cell	length a length b length c angle alpha angle beta angle gamma 62.382 91.540 64.930 90.00 91.50 90.00
method	X-Ray Diffraction	resolution	2.39 Å
ligand	5ID, NA, PTR, SO4 BindingDB	enzyme	Transferase E.C.2.7.11.24 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structure of human mono-phosphorylated ERK1 at Tyr204., Kinoshita T, Yoshida I, Nakae S, Okita K, Gouda M, Matsubara M, Yokota K, Ishiguro H, Tada T, Biochem Biophys Res Commun. 2008 Dec 26;377(4):1123-7. Epub 2008 Nov 5. PMID:18983981

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk] Biological Unit Coordinates (2zoq.pdb1.gz) 62 Kb Biological Unit Coordinates (2zoq.pdb2.gz) 62 Kb LPC: Ligand-Protein Contacts for 2ZOQ CSU: Contacts of Structural Units for 2ZOQ Likely Quarternary Molecular Structure file(s) for 2ZOQ Structure Factors (218 Kb) Retrieve 2ZOQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2ZOQ from S2C, [Save to disk] Re-refined 2zoq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2ZOQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2ZOQ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2ZOQ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2zoq] [2zoq_A] [2zoq_B] SWISS-PROT database: [P27361] Domain organization of [MK03_HUMAN] by SWISSPFAM Domain found in 2ZOQ: [S_TKc ] by SMART

Other resources with information on 2ZOQ

Community annotation for 2ZOQ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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