2ZOX	Hydrolase	date	Jun 17, 2008
title	Crystal Structure Of The Covalent Intermediate Of Human Cyto Beta-Glucosidase
authors	J.Noguchi, Y.Hayashi, Y.Baba, N.Okino, M.Kimura, M.Ito, Y.Kakuta
compound		source
Molecule: Cytosolic Beta-Glucosidase Chain: A Synonym: Cytosolic Beta-Glucosidase-Like Protein 1 Ec: 3.2.1.21 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Gba3, Cbg, Cbgl1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Codon Plus Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet23b
symmetry	Space Group: P 21 21 21	R_factor 0.191 R_Free 0.226
crystal cell	length a length b length c angle alpha angle beta angle gamma 66.120 82.529 91.673 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	GLC, GOL, MG, OLA, PLM, PNG, PO4	enzyme	Hydrolase E.C.3.2.1.21 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of the covalent intermediate of human cytosolic beta-glucosidase., Noguchi J, Hayashi Y, Baba Y, Okino N, Kimura M, Ito M, Kakuta Y, Biochem Biophys Res Commun. 2008 Sep 26;374(3):549-52. Epub 2008 Jul 26. PMID:18662675

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk] Biological Unit Coordinates (2zox.pdb1.gz) 80 Kb LPC: Ligand-Protein Contacts for 2ZOX CSU: Contacts of Structural Units for 2ZOX Likely Quarternary Molecular Structure file(s) for 2ZOX Structure Factors (300 Kb) Retrieve 2ZOX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2ZOX from S2C, [Save to disk] Re-refined 2zox structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2ZOX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2ZOX

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2ZOX, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2zox_A] [2zox] SWISS-PROT database: [Q9H227] Domain organization of [GBA3_HUMAN] by SWISSPFAM

Other resources with information on 2ZOX

Community annotation for 2ZOX at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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