2ZPN	Protein Transport	date	Jul 17, 2008
title	The Crystal Structure Of Saccharomyces Cerevisiae Atg8- Atg1 Complex
authors	N.N.Noda, F.Inagaki
compound		source
Molecule: Autophagy-Related Protein 8 Chain: A, B, C, D Synonym: Autophagy-Related Ubiquitin-Like Modifier Atg8, Cy Vacuole Targeting Protein 5; Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Atg8, Apg8, Aut7, Cvt5, Ybl078c, Ybl0732 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pht1
Molecule: Saccharomyces Cerevisiae Atg19(412-415) Chain: E, F, G, H Engineered: Yes		Synthetic: Yes Other_details: This Sequence Corresponds To Residues 412-41 Saccharomyces Cerevisiae Atg19.
symmetry	Space Group: P 21 21 21	R_factor 0.242 R_Free 0.302
crystal cell	length a length b length c angle alpha angle beta angle gamma 44.150 104.450 113.020 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	SO4	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structural basis of target recognition by Atg8/LC3 during selective autophagy., Noda NN, Kumeta H, Nakatogawa H, Satoo K, Adachi W, Ishii J, Fujioka Y, Ohsumi Y, Inagaki F, Genes Cells. 2008 Oct 22. PMID:19021777

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk] Biological Unit Coordinates (2zpn.pdb1.gz) 20 Kb Biological Unit Coordinates (2zpn.pdb2.gz) 19 Kb Biological Unit Coordinates (2zpn.pdb3.gz) 19 Kb Biological Unit Coordinates (2zpn.pdb4.gz) 19 Kb LPC: Ligand-Protein Contacts for 2ZPN CSU: Contacts of Structural Units for 2ZPN Likely Quarternary Molecular Structure file(s) for 2ZPN Structure Factors (110 Kb) Retrieve 2ZPN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2ZPN from S2C, [Save to disk] Re-refined 2zpn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2ZPN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2ZPN

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2ZPN, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2zpn_] [2zpn_G] [2zpn_H] [2zpn_F] [2zpn] [2zpn_C] [2zpn_B] [2zpn_E] [2zpn_D] [2zpn_A] SWISS-PROT database: [P35193] [P38182] Domain organization of [ATG19_YEAST] [ATG8_YEAST] by SWISSPFAM

Other resources with information on 2ZPN

Community annotation for 2ZPN at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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