2ZRR Antimicrobial Protein date Aug 30, 2008
title Crystal Structure Of An Immunity Protein That Contributes To Protection Of Bacteriocin-Producing Enterococcus Mundtii 15
authors H.J.Jeon, M.Noda, Y.Matoba, T.Kumagai, M.Sugiyama
compound source
Molecule: Mundticin Ks Immunity Protein
Chain: A
Engineered: Yes
Organism_scientific: Enterococcus Mundtii
Organism_taxid: 53346
Strain: 15-1a
Gene: Orf8
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28a(+)
symmetry Space Group: I 2 2 2
R_factor 0.228 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
28.710 73.780 94.760 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
note 2ZRR is a representative structure
Primary referenceCrystal structure and mutagenic analysis of a bacteriocin immunity protein, Mun-im., Jeon HJ, Noda M, Matoba Y, Kumagai T, Sugiyama M, Biochem Biophys Res Commun. 2009 Jan 16;378(3):574-8. Epub 2008 Dec 4. PMID:19061861
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (19 Kb) [Save to disk]
  • Biological Unit Coordinates (2zrr.pdb1.gz) 15 Kb
  • CSU: Contacts of Structural Units for 2ZRR
  • Likely Quarternary Molecular Structure file(s) for 2ZRR
  • Structure Factors (77 Kb)
  • Retrieve 2ZRR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZRR from S2C, [Save to disk]
  • Re-refined 2zrr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZRR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZRR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ZRR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zrr_A] [2zrr]
  • SWISS-PROT database: [B9A7V6]
  • Domain organization of [B9A7V6_ENTMU] by SWISSPFAM
  • Other resources with information on 2ZRR
  • Community annotation for 2ZRR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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