2ZRS	Apoptosis	date	Sep 01, 2008
title	Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
authors	H.Suzuki, M.Kawasaki, T.Kakiuchi, H.Shibata, S.Wakatsuki, M.Maki
compound		source
Molecule: Programmed Cell Death Protein 6 Chain: A, B, C, D, E, F, G, H Fragment: Unp Residues 24-191 Synonym: Apoptosis-Linked Gene 2 Protein, Calcium-Binding P Alg-2; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pdcd6, Alg2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet3d
symmetry	Space Group: P 21 21 21	R_factor 0.222 R_Free 0.280
crystal cell	length a length b length c angle alpha angle beta angle gamma 54.780 154.425 237.676 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.10 Å
ligand	CA	enzyme
Gene Ontology	Chain Function Process Component F, A, E, B, H, C, D, G
Primary reference	Crystallization and X-ray diffraction analysis of N-terminally truncated human ALG-2., Suzuki H, Kawasaki M, Kakiuchi T, Shibata H, Wakatsuki S, Maki M, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Nov 1;64(Pt, 11):974-7. Epub 2008 Oct 31. PMID:18997320

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (220 Kb) [Save to disk] Biological Unit Coordinates (2zrs.pdb1.gz) 56 Kb Biological Unit Coordinates (2zrs.pdb2.gz) 56 Kb Biological Unit Coordinates (2zrs.pdb3.gz) 56 Kb Biological Unit Coordinates (2zrs.pdb4.gz) 55 Kb LPC: Ligand-Protein Contacts for 2ZRS CSU: Contacts of Structural Units for 2ZRS Likely Quarternary Molecular Structure file(s) for 2ZRS Structure Factors (530 Kb) Retrieve 2ZRS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2ZRS from S2C, [Save to disk] Re-refined 2zrs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2ZRS in 3D

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Visual 3D analysis of 2ZRS

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2ZRS, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2zrs_G] [2zrs_E] [2zrs_H] [2zrs] [2zrs_A] [2zrs_B] [2zrs_D] [2zrs_F] [2zrs_C] SWISS-PROT database: [O75340] Belongs to the general secretory pathway (sec) family according to TCDB. Domain organization of [PDCD6_HUMAN] by SWISSPFAM Domain found in 2ZRS: [EFh ] by SMART

Other resources with information on 2ZRS

Community annotation for 2ZRS at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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