2ZSH Hormone Receptor date Sep 10, 2008
title Structural Basis Of Gibberellin(Ga3)-Induced Della Recogniti Gibberellin Receptor
authors K.Murase, Y.Hirano, T.P.Sun, T.Hakoshima
compound source
Molecule: Probable Gibberellin Receptor Gid1l1
Chain: A
Synonym: Gid1a, Gid1-Like Protein 1
Engineered: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress,Thale-Cress
Organism_taxid: 3702
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Star (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcdfduet-1

Molecule: Della Protein Gai
Chain: B
Fragment: Della Domain, Unp Residues 11-113
Synonym: Gibberellic Acid-Insensitive Mutant Protein, Resto Growth On Ammonia Protein 2;
Engineered: Yes

Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress,Thale-Cress
Organism_taxid: 3702
Gene: Gai
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Star (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet47b
symmetry Space Group: P 43 21 2
R_factor 0.205 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.018 82.018 130.080 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand GA3 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceGibberellin-induced DELLA recognition by the gibberellin receptor GID1., Murase K, Hirano Y, Sun TP, Hakoshima T, Nature. 2008 Nov 27;456(7221):459-63. PMID:19037309
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (2zsh.pdb1.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 2ZSH
  • CSU: Contacts of Structural Units for 2ZSH
  • Likely Quarternary Molecular Structure file(s) for 2ZSH
  • Structure Factors (291 Kb)
  • Retrieve 2ZSH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZSH from S2C, [Save to disk]
  • Re-refined 2zsh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZSH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZSH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ZSH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zsh_B] [2zsh_A] [2zsh]
  • SWISS-PROT database: [Q9LQT8] [Q9MAA7]
  • Domain organization of [GAI_ARATH] [GI1L1_ARATH] by SWISSPFAM
  • Domain found in 2ZSH: [DELLA ] by SMART
  • Other resources with information on 2ZSH
  • Community annotation for 2ZSH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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