2ZUR Metal Binding Protein date Oct 28, 2008
title Crystal Structure Of Rh(Nbd)Apo-Fr
authors S.Abe, K.Hirata, T.Ueno, N.Shimizu, M.Yamamoto, M.Takata, Y.Watana
compound source
Molecule: Ferritin Light Chain
Chain: X
Synonym: Ferritin L Subunit
Engineered: Yes
Organism_scientific: Equus Caballus
Organism_common: Horse
Organism_taxid: 9796
Gene: Ftl
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Nova Blue
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmk2
symmetry Space Group: F 4 3 2
R_factor 0.175 R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
181.276 181.276 181.276 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand C4R, CD, EDO, RH, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
X


Primary referencePolymerization of phenylacetylene by rhodium complexes within a discrete space of apo-ferritin., Abe S, Hirata K, Ueno T, Morino K, Shimizu N, Yamamoto M, Takata M, Yashima E, Watanabe Y, J Am Chem Soc. 2009 May 27;131(20):6958-60. PMID:19453195
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (2zur.pdb1.gz) 808 Kb
  • LPC: Ligand-Protein Contacts for 2ZUR
  • CSU: Contacts of Structural Units for 2ZUR
  • Likely Quarternary Molecular Structure file(s) for 2ZUR
  • Structure Factors (350 Kb)
  • Retrieve 2ZUR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZUR from S2C, [Save to disk]
  • Re-refined 2zur structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZUR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZUR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ZUR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zur] [2zur_X]
  • SWISS-PROT database: [P02791]
  • Domain organization of [FRIL_HORSE] by SWISSPFAM
  • Other resources with information on 2ZUR
  • Community annotation for 2ZUR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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